PUMA: PANDA Using MicroRNA Associations - PubMed
2020年9月15日 · We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with target gene co-expression information to model genome-wide gene regulation by miRNAs.
GitHub - mararie/PUMA: PUMA: PANDA Using MicroRNA …
PUMA, or PANDA Using MicroRNA Associations, is an extension of the gene regulatory network reconstruction algorithm PANDA, which was published in "Passing messages between biological networks to refine predicted interactions" by Glass K, Huttenhower C, Quackenbush J, Yuan GC.
PUMA: PANDA Using MicroRNA Associations - PMC - National …
2020年9月9日 · Here, we present PUMA, or PANDA Using MicroRNA Associations, an algorithm that can directly model robust regulatory edges (including new edges) between miRNAs and their target genes. PUMA starts with prior knowledge from miRNA target predictions, and then fine-tunes these predictions by comparing with information regarding the co-regulation of ...
GitHub - kuijjerlab/PUMA: PUMA: PANDA Using MicroRNA …
PUMA, or PANDA Using MicroRNA Associations, is a regulatory network reconstruction algorithm that uses message passing to model gene regulatory interactions. PUMA can reconstruct gene regulatory networks using both transcription factors and microRNAs as regulators of mRNA expression levels.
PUMA :: The network zoo - GitHub Pages
We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with target gene co-expression information to model genome-wide gene regulation by miRNAs.
KimberlyGlass - PUMA - Google Sites
We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with protein-protein interaction and...
PUMA: PANDA Using MicroRNA Associations - bioRxiv
2019年12月19日 · We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with protein-protein interaction and target gene co-expression information to model genome-wide gene regulation by miRNAs.
PUMA: PANDA Using MicroRNA Associations - ResearchGate
2020年6月17日 · We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with target gene co-expression...
PUMA: PANDA Using MicroRNA Associations - Semantic Scholar
We developed PUMA (PANDA Using MicroRNA Associations), a computational tool that uses message passing to integrate a prior network of miRNA target predictions with protein-protein interaction and target gene co-expression information to …
puma : PANDA using microRNA associations - R Package …
2024年10月16日 · Each row describes the association between a miRNA (column 1) its target gene (column 2) and a score (column 3) for the association from TargetScan or miRanda. This can be set to 1) NULL which will be encoded as an identity matrix between miRNAs in PUMA for now. Or 2) it can include a set of TF interactions, or 3) a mix of TFs and miRNAs.